Genome, Genomics, and Personal Genomics

Centers for Disease Control and Prevention: Public Health Genomics

National Center for Biotechnology Information: Genome

National Library of Medicine: Genetics Home Reference

RESEARCH DATA 

Drug Gene Interaction Database (DGIdb)

Genome Reference Consortium (GRC)

ENSEMBL: Homo sapiens 

European Nucleotide Archive

GenomeNet (Japan)

International Cancer Genome Atlas

International Genome Sample Resource (IGSR)

Leiden Open (source) Variation Database 

NCI Genomic Data Commons: GDC Portal

Public Genome Data

PERSONAL DATA

69 Genomes Data 

Genome Databases & Browsers 

Google Genomics 

​Open Personal Genomics Consortium 

OpenSNP

Personal Genome Project

ABOUT

Kannan L, et al. Public data and open source tools for multi-assay genomic investigation of disease. Briefings in Bioinformatics 2016 17(4):603–615. https://doi.org/10.1093/bib/bbv080

EXAMPLES 

CONSERTING (Copy Number Segmentation by Regression Tree in Next Generation Sequencing) & CREST (Clipping Reveals Structure)

GENOME: A rapid coalescent-based whole genome simulator

Genome Analysis Toolkit (GATK)

GenomeTools

Open Genomics Engine (OpenGE)

COLLECTIONS 

Bioinformatics: Software Development

Complete Genomics: Compatible Third-Party Tools

GenomeSpace Tools and Data Sources

UM: Center for Statistical Genetics: Software

UM: Computational Medicine and Bioinformatics: DCMB Software and Bioinformatics Tools

UM: Office of Research: Bioinformatics Tools

UMD: Center for Bioinformatics and Computational Biology (CBCB): Software

U. Wisconsin: Software for Genomic Data Analysis

Wikipedia: List of open-source bioinformatics software