DATA
BiGG Models (Models, reactions, metabolites, genes)
Biological Magnetic Resonance Data Bank (BMRB)
Data.gov: Metabolomics Workbench (MetWB)
Golm Metabolome Database (GMD)
Human Metabolome Database (HMDB)
METLIN (Scripps)
NSF: Metabolic In Silico Network Expansion (MINE) Databases
Reactome (Reactions, Proteins, Pathways)
SetupX and BinBase (Fiehn Lab, UC Davis)
WHO: IARC: Exposome Explorer
COMPOUNDS
ChEBI (Chemical Entities of Biological Interest)
Food ComEx (Food Compound Exchange)
PATHWAYS
MetaCyc Metabolic Pathway Database
Reactome (Reactions, Proteins, Pathways)
Serum Metabolome (TMIC)
SPECIAL TOPIC EXAMPLES
E. coli Metabolome Database (ECMDB)
Livestock Metabolome Database (LMDB)
Smart Metabolites Database (GC/MS/MS-analysis)
Yeast Metabolome Database (YMDB)
COLLECTIONS
FOODBALL (Food Biomarker Alliaince): Databases
Metabolomics Society: Databases
Metabolomics Workbench: Links to Metabolomics Tools
The Arabidopsis Information Resource (TAIR): Pathway and Compound Databases
University of Freiburg, Center for Biological Systems Analysis: Metabolomics Database
WikiBooks: Metabolomics/Databases
Binner - Java application used for reduction of MS data
MAVEN ("an open source cross platform metabolomics data analyser")
XCMS Online: Scripps Center for Metabolomics
COLLECTIONS
Metabolomics Society: Metabolomics Software and Servers
OMICTools: Bioinformatics Tools for Metabolomics
UC Davis, Fiehn Lab: Peak Alignment of LC, GC, MS, NMR data
ABOUT
Spicer et al. Navigating freely-available software tools for metabolomics analysis. Metabolomics. 2017; 13(9): 106.